- rewrote doxygen documentation generation integration with Scons (still need some clean-up): list of sources is explicitly passed to a doxyfile builder which is used as input of a doxygen builder. Hence, the doxyfile depends on all the sources.
- documentation is now correctly generated once when source are changed on the first scons run.
diff --git a/SConstruct b/SConstruct
index a957617..c714f39 100644
--- a/SConstruct
+++ b/SConstruct
@@ -15,15 +15,15 @@
 try:
     platform = ARGUMENTS['platform']
     if platform == 'linux-gcc':
-	CXX = 'g++' # not quite right, but env is not yet available.
-	import commands
-	version = commands.getoutput('%s -dumpversion' %CXX)
-	platform = 'linux-gcc-%s' %version
-	print "Using platform '%s'" %platform
-	LD_LIBRARY_PATH = os.environ.get('LD_LIBRARY_PATH', '')
-	LD_LIBRARY_PATH = "%s:libs/%s" %(LD_LIBRARY_PATH, platform)
-	os.environ['LD_LIBRARY_PATH'] = LD_LIBRARY_PATH
-	print "LD_LIBRARY_PATH =", LD_LIBRARY_PATH
+        CXX = 'g++' # not quite right, but env is not yet available.
+        import commands
+        version = commands.getoutput('%s -dumpversion' %CXX)
+        platform = 'linux-gcc-%s' %version
+        print "Using platform '%s'" %platform
+        LD_LIBRARY_PATH = os.environ.get('LD_LIBRARY_PATH', '')
+        LD_LIBRARY_PATH = "%s:libs/%s" %(LD_LIBRARY_PATH, platform)
+        os.environ['LD_LIBRARY_PATH'] = LD_LIBRARY_PATH
+        print "LD_LIBRARY_PATH =", LD_LIBRARY_PATH
 except KeyError:
     print 'You must specify a "platform"'
     sys.exit(2)
@@ -95,6 +95,7 @@
 env.Tool('substinfile')
 env.Tool('targz')
 env.Tool('srcdist')
+env.Tool('glob')
 
 env.Append( CPPPATH = ['#include'],
             LIBPATH = lib_dir )
@@ -165,9 +166,6 @@
 def runJSONTests_string( target, source = None, env = None ):
     return 'RunJSONTests("%s")' % source
 
-##def buildDoc( doxyfile_path ):
-##    doc_cmd = env.Doxygen( doxyfile_path )
-
 import SCons.Action
 ActionFactory = SCons.Action.ActionFactory
 RunJSONTests = ActionFactory(runJSONTests_action, runJSONTests_string )
@@ -182,4 +180,5 @@
 buildProjectInDirectory( 'src/jsontestrunner' )
 buildProjectInDirectory( 'src/lib_json' )
 buildProjectInDirectory( 'doc' )
+#print env.Dump()
 
diff --git a/doc/roadmap.dox b/doc/roadmap.dox
index 2a0dcc6..84648b9 100644
--- a/doc/roadmap.dox
+++ b/doc/roadmap.dox
@@ -21,6 +21,8 @@
 	- look into iconv, icu and windows API
   \section ms_strict Adds a strict mode to reader/parser
 	Strict JSON support as specific in RFC 4627 (http://www.ietf.org/rfc/rfc4627.txt?number=4627).
+	- Enforce only object or array as root element
+	- Disable comment support
   \section ms_separation Expose json reader/writer API that do not impose using Json::Value.
 	Some typical use-case involve an application specific structure to/from a JSON document.
 	- Performance oriented parser/writer:
diff --git a/doc/sconscript b/doc/sconscript
index 3e4205c..62b481e 100644
--- a/doc/sconscript
+++ b/doc/sconscript
@@ -1,26 +1,60 @@
 Import( 'env' )
 import os.path
 
-if 'doxygen' in env['TOOLS']:
-    doc_topdir = env['ROOTBUILD_DIR']
-    doxyfile = env.SubstInFile( '#doc/doxyfile', 'doxyfile.in',
-                                SUBST_DICT = {
-                                    '%JSONCPP_VERSION%' : env['JSONCPP_VERSION'],
-                                    '%TOPDIR%' : env.Dir('#').abspath,
-                                    '%DOC_TOPDIR%' : str(doc_topdir) } )
-    doc_cmd = env.Doxygen( doxyfile )
-    alias_doc_cmd = env.Alias('doc', doc_cmd )
-    env.AlwaysBuild(alias_doc_cmd)
+if 'doxygen' in env['TOOLS']:    
+    doc_topdir = str(env['ROOTBUILD_DIR'])
+    html_dir = 'jsoncpp-api-doc'
 
-    for dir in doc_cmd:
-        env.Alias('doc', env.Install( '#' + dir.path, '#README.txt' ) )
-        filename = os.path.split(dir.path)[1]
-        targz_path = os.path.join( env['DIST_DIR'], '%s.tar.gz' % filename )
-        zip_doc_cmd = env.TarGz( targz_path, [env.Dir(dir)],
-                                 TARGZ_BASEDIR = doc_topdir )
-        env.Depends( zip_doc_cmd, alias_doc_cmd )
-        env.Alias( 'doc-dist', zip_doc_cmd )
+    doxygen_inputs = env.Glob( includes = '*.dox', dir = '#doc' ) \
+                     + env.Glob( includes = '*.h', dir = '#include/json/' ) \
+                     + env.Glob( includes = ('*.dox','*.h','*.inl','*.cpp'),
+                                 dir = '#src/lib_json' )
+##    for p in doxygen_inputs:
+##        print p.abspath
 
-    # When doxyfile gets updated, I get errors on the first pass.
-    # I have to run scons twice.  Something is wrong with the dependencies
-    # here, but I avoid it by running "scons doc/doxyfile" first.
+    top_dir = env.Dir('#').abspath
+    include_top_dir = env.Dir('#include').abspath
+    env['DOXYFILE_DICT'] = { 'PROJECT_NAME': 'JsonCpp',
+                             'PROJECT_NUMBER': env['JSONCPP_VERSION'],
+                             'STRIP_FROM_PATH': top_dir,
+                             'STRIP_FROM_INC_PATH': include_top_dir,
+                             'HTML_OUTPUT': html_dir,
+                             'HTML_HEADER': env.File('#doc/header.html').abspath,
+                             'HTML_FOOTER': env.File('#doc/footer.html').abspath,
+                             'INCLUDE_PATH': include_top_dir,
+                             'PREDEFINED': 'JSONCPP_DOC_EXCLUDE_IMPLEMENTATION JSON_VALUE_USE_INTERNAL_MAP'
+                             }
+    env['DOXYFILE_FILE'] = 'doxyfile.in'
+    doxfile_nodes = env.Doxyfile( os.path.join( doc_topdir, 'doxyfile' ), doxygen_inputs )
+    html_doc_path = os.path.join( doc_topdir, html_dir )
+    doc_nodes = env.Doxygen( source = doxfile_nodes,
+                             target = os.path.join( html_doc_path, 'index.html' ) )
+    alias_doc_cmd = env.Alias('doc', doc_nodes )
+    env.Alias('doc', env.Install( html_doc_path, '#README.txt' ) )
+    targz_path = os.path.join( env['DIST_DIR'], '%s.tar.gz' % html_dir )
+    zip_doc_cmd = env.TarGz( targz_path, [env.Dir(html_doc_path)],
+                             TARGZ_BASEDIR = env['ROOTBUILD_DIR'] )
+    env.Depends( zip_doc_cmd, alias_doc_cmd )
+    env.Alias( 'doc-dist', zip_doc_cmd )
+##    
+##    doxyfile = env.SubstInFile( '#doc/doxyfile', 'doxyfile.in',
+##                                SUBST_DICT = {
+##                                    '%JSONCPP_VERSION%' : env['JSONCPP_VERSION'],
+##                                    '%TOPDIR%' : env.Dir('#').abspath,
+##                                    '%DOC_TOPDIR%' : str(doc_topdir) } )
+##    doc_cmd = env.Doxygen( doxyfile )
+##    alias_doc_cmd = env.Alias('doc', doc_cmd )
+##    env.AlwaysBuild(alias_doc_cmd)
+##
+##    for dir in doc_cmd:
+##        env.Alias('doc', env.Install( '#' + dir.path, '#README.txt' ) )
+##        filename = os.path.split(dir.path)[1]
+##        targz_path = os.path.join( env['DIST_DIR'], '%s.tar.gz' % filename )
+##        zip_doc_cmd = env.TarGz( targz_path, [env.Dir(dir)],
+##                                 TARGZ_BASEDIR = doc_topdir )
+##        env.Depends( zip_doc_cmd, alias_doc_cmd )
+##        env.Alias( 'doc-dist', zip_doc_cmd )
+##
+##    # When doxyfile gets updated, I get errors on the first pass.
+##    # I have to run scons twice.  Something is wrong with the dependencies
+##    # here, but I avoid it by running "scons doc/doxyfile" first.
diff --git a/scons-tools/doxygen.py b/scons-tools/doxygen.py
index 7b8dee4..a03314e 100644
--- a/scons-tools/doxygen.py
+++ b/scons-tools/doxygen.py
@@ -2,201 +2,112 @@
 # emitter depends on doxyfile which is generated from doxyfile.in.
 # build fails after cleaning and relaunching the build.
 
+# Todo:
+# Add helper function to environment like for glob
+# Easier passage of header/footer
+# Automatic deduction of index.html path based on custom parameters passed to doxyfile
+
 import os
 import os.path
 import glob
 from fnmatch import fnmatch
+import SCons
 
-def DoxyfileParse(file_contents):
+def Doxyfile_emitter(target, source, env):
    """
-   Parse a Doxygen source file and return a dictionary of all the values.
-   Values will be strings and lists of strings.
+   Modify the target and source lists to use the defaults if nothing
+   else has been specified.
+
+   Dependencies on external HTML documentation references are also
+   appended to the source list.
    """
-   data = {}
+   doxyfile_template = env.File(env['DOXYFILE_FILE'])
+   source.insert(0, doxyfile_template)
 
-   import shlex
-   lex = shlex.shlex(instream = file_contents, posix = True)
-   lex.wordchars += "*+./-:"
-   lex.whitespace = lex.whitespace.replace("\n", "")
-   lex.escape = ""
+   return target, source 
 
-   lineno = lex.lineno
-   last_backslash_lineno = lineno
-   token = lex.get_token()
-   key = token   # the first token should be a key
-   last_token = ""
-   key_token = False
-   next_key = False
-   new_data = True
+def Doxyfile_Builder(target, source, env):
+   """Input:
+   DOXYFILE_FILE
+   Path of the template file for the output doxyfile
 
-   def append_data(data, key, new_data, token):
-      if new_data or len(data[key]) == 0:
-         data[key].append(token)
-      else:
-         data[key][-1] += token
-
-   while token:
-      if token in ['\n']:
-         if last_token not in ['\\']:
-            key_token = True
-      elif token in ['\\']:
-         pass
-      elif key_token:
-         key = token
-         key_token = False
-      else:
-         if token == "+=":
-            if not data.has_key(key):
-               data[key] = list()
-         elif token == "=":
-            data[key] = list()
-         else:
-            append_data( data, key, new_data, token )
-            new_data = True
-
-      last_token = token
-      token = lex.get_token()
-      
-      if last_token == '\\' and token != '\n':
-         new_data = False
-         append_data( data, key, new_data, '\\' )
-
-   # compress lists of len 1 into single strings
-   for (k, v) in data.items():
-      if len(v) == 0:
-         data.pop(k)
-
-      # items in the following list will be kept as lists and not converted to strings
-      if k in ["INPUT", "FILE_PATTERNS", "EXCLUDE_PATTERNS"]:
-         continue
-
-      if len(v) == 1:
-         data[k] = v[0]
-
-   return data
-
-def DoxySourceScan(node, env, path):
+   DOXYFILE_DICT
+   A dictionnary of parameter to append to the generated doxyfile
    """
-   Doxygen Doxyfile source scanner.  This should scan the Doxygen file and add
-   any files used to generate docs to the list of source files.
-   """
-   default_file_patterns = [
-      '*.c', '*.cc', '*.cxx', '*.cpp', '*.c++', '*.java', '*.ii', '*.ixx',
-      '*.ipp', '*.i++', '*.inl', '*.h', '*.hh ', '*.hxx', '*.hpp', '*.h++',
-      '*.idl', '*.odl', '*.cs', '*.php', '*.php3', '*.inc', '*.m', '*.mm',
-      '*.py',
-   ]
-
-   default_exclude_patterns = [
-      '*~',
-   ]
-
-   sources = []
-
-   data = DoxyfileParse(node.get_contents())
-
-   if data.get("RECURSIVE", "NO") == "YES":
-      recursive = True
-   else:
-      recursive = False
-
-   file_patterns = data.get("FILE_PATTERNS", default_file_patterns)
-   exclude_patterns = data.get("EXCLUDE_PATTERNS", default_exclude_patterns)
-
-   doxyfile_dir = str( node.dir )
-
-##   print 'running from', os.getcwd()
-   for node in data.get("INPUT", []):
-      node_real_path = os.path.normpath( os.path.join( doxyfile_dir, node ) )
-      if os.path.isfile(node_real_path):
-##         print str(node), 'is a file'
-         sources.append(node)
-      elif os.path.isdir(node_real_path):
-##         print str(node), 'is a directory'
-         if recursive:
-            for root, dirs, files in os.walk(node):
-               for f in files:
-                  filename = os.path.join(root, f)
-
-                  pattern_check = reduce(lambda x, y: x or bool(fnmatch(filename, y)), file_patterns, False)
-                  exclude_check = reduce(lambda x, y: x and fnmatch(filename, y), exclude_patterns, True)
-
-                  if pattern_check and not exclude_check:
-                     sources.append(filename)
-##                     print '  adding source', os.path.abspath( filename )
-         else:
-            for pattern in file_patterns:
-               sources.extend(glob.glob(os.path.join( node, pattern)))
-##      else:
-##         print str(node), 'is neither a file nor a directory'
-   sources = map( lambda path: env.File(path), sources )
-   return sources
-
-
-def DoxySourceScanCheck(node, env):
-   """Check if we should scan this file"""
-   return os.path.isfile(node.path)
-
-def DoxyEmitter(source, target, env):
-   """Doxygen Doxyfile emitter"""
-   # possible output formats and their default values and output locations
-   output_formats = {
-      "HTML": ("YES", "html"),
-      "LATEX": ("YES", "latex"),
-      "RTF": ("NO", "rtf"),
-      "MAN": ("YES", "man"),
-      "XML": ("NO", "xml"),
-   }
-
-##   print '#### DoxyEmitter:', source[0].abspath, os.path.exists( source[0].abspath )
-   data = DoxyfileParse(source[0].get_contents())
-
-   targets = []
-   out_dir = data.get("OUTPUT_DIRECTORY", ".")
-
-   # add our output locations
-   for (k, v) in output_formats.items():
-      if data.get("GENERATE_" + k, v[0]) == "YES":
-         targets.append(env.Dir( os.path.join(out_dir, data.get(k + "_OUTPUT", v[1]))) )
-
-   # don't clobber targets
-   for node in targets:
-      env.Precious(node)
-
-   # set up cleaning stuff
-   for node in targets:
-      clean_cmd = env.Clean(node, node)
-      env.Depends( clean_cmd, source )
-
-   return (targets, source)
+   subdir = os.path.split(source[0].abspath)[0]
+   doc_top_dir = os.path.split(target[0].abspath)[0]
+   doxyfile_path = source[0].abspath
+   doxy_file = file( target[0].abspath, 'wt' )
+   try:
+      # First, output the template file
+      try:
+         f = file(doxyfile_path, 'rt')
+         doxy_file.write( f.read() )
+         f.close()
+         doxy_file.write( '\n' )
+         doxy_file.write( '# Generated content:\n' )
+      except:
+         raise SCons.Errors.UserError, "Can't read doxygen template file '%s'" % doxyfile_path
+      # Then, the input files
+      doxy_file.write( 'INPUT                  = \\\n' )
+      for source in source:
+         if source.abspath != doxyfile_path: # skip doxyfile path, which is the first source
+            doxy_file.write( '"%s" \\\n' % source.abspath )
+      doxy_file.write( '\n' )
+      # Dot...
+      values_dict = { 'HAVE_DOT': env.get('DOT') and 'YES' or 'NO',
+                      'DOT_PATH': env.get('DOT') and os.path.split(env['DOT'])[0] or '',
+                      'OUTPUT_DIRECTORY': doc_top_dir,
+                      'WARN_LOGFILE': target[0].abspath + '-warning.log'}
+      values_dict.update( env['DOXYFILE_DICT'] )
+      # Finally, output user dictionary values which override any of the previously set parameters.
+      for key, value in values_dict.iteritems():
+         doxy_file.write ('%s = "%s"\n' % (key, str(value))) 
+   finally:
+      doxy_file.close()
 
 def generate(env):
    """
    Add builders and construction variables for the
-   Doxygen tool.  This is currently for Doxygen 1.4.6.
+   Doxygen tool.
    """
-   doxyfile_scanner = env.Scanner(
-      DoxySourceScan,
-      "DoxySourceScan",
-      scan_check = DoxySourceScanCheck,
-   )
+   ## Doxyfile builder
+   def doxyfile_message (target, source, env):
+       return "creating Doxygen config file '%s'" % target[0]
 
-   doxyfile_builder = env.Builder(
-      action = env.Action("cd ${SOURCE.dir}  &&  ${DOXYGEN} ${SOURCE.file}",
-                          varlist=['$SOURCES']),
-      emitter = DoxyEmitter,
-      target_factory = env.fs.Entry,
-      single_source = True,
-      source_scanner =  doxyfile_scanner,
-   )
+   doxyfile_variables = [
+       'DOXYFILE_DICT',
+       'DOXYFILE_FILE'
+       ]
 
-   env.Append(BUILDERS = {
-      'Doxygen': doxyfile_builder,
-   })
+   doxyfile_action = SCons.Action.Action( Doxyfile_Builder, doxyfile_message,
+                                          doxyfile_variables )
 
-   env.AppendUnique(
-      DOXYGEN = 'doxygen',
-   )
+   doxyfile_builder = SCons.Builder.Builder( action = doxyfile_action,
+                                             emitter = Doxyfile_emitter )
+
+   env['BUILDERS']['Doxyfile'] = doxyfile_builder
+   env['DOXYFILE_DICT'] = {}
+   env['DOXYFILE_FILE'] = 'doxyfile.in'
+
+   ## Doxygen builder
+   def Doxygen_emitter(target, source, env):
+      output_dir = str( source[0].dir )
+      if str(target[0]) == str(source[0]):
+         target = env.File( os.path.join( output_dir, 'html', 'index.html' ) )
+      return target, source
+
+   doxygen_action = SCons.Action.Action( [ '$DOXYGEN_COM'] )
+   doxygen_builder = SCons.Builder.Builder( action = doxygen_action,
+                                            emitter = Doxygen_emitter )
+   env['BUILDERS']['Doxygen'] = doxygen_builder
+   env['DOXYGEN_COM'] = '$DOXYGEN $DOXYGEN_FLAGS $SOURCE'
+   env['DOXYGEN_FLAGS'] = ''
+   env['DOXYGEN'] = 'doxygen'
+    
+   dot_path = env.WhereIs("dot")
+   if dot_path:
+      env['DOT'] = dot_path
 
 def exists(env):
    """
diff --git a/scons-tools/glob.py b/scons-tools/glob.py
new file mode 100644
index 0000000..8ee3cbb
--- /dev/null
+++ b/scons-tools/glob.py
@@ -0,0 +1,53 @@
+import fnmatch

+import os

+

+def generate( env ): 

+   def Glob( env, includes = None, excludes = None, dir = '.' ):

+      """Adds Glob( includes = Split( '*' ), excludes = None, dir = '.')

+       helper function to environment.

+

+       Glob both the file-system files.

+

+       includes: list of file name pattern included in the return list when matched.

+       excludes: list of file name pattern exluced from the return list.

+

+       Example:

+       sources = env.Glob( ("*.cpp", '*.h'), "~*.cpp", "#src" )

+      """

+      def filterFilename(path):

+         abs_path = os.path.join( dir, path )

+         if not os.path.isfile(abs_path):

+            return 0

+         fn = os.path.basename(path)

+         match = 0

+         for include in includes:

+            if fnmatch.fnmatchcase( fn, include ):

+               match = 1

+               break

+         if match == 1 and not excludes is None:

+            for exclude in excludes:

+               if fnmatch.fnmatchcase( fn, exclude ):

+                  match = 0

+                  break

+         return match

+      if includes is None:

+         includes = ('*',)

+      elif type(includes) in ( type(''), type(u'') ):

+         includes = (includes,)

+      if type(excludes) in ( type(''), type(u'') ):

+         excludes = (excludes,)

+      dir = env.Dir(dir).abspath

+      paths = os.listdir( dir )

+      def makeAbsFileNode( path ):

+         return env.File( os.path.join( dir, path ) )

+      nodes = filter( filterFilename, paths )

+      return map( makeAbsFileNode, nodes )

+

+   from SCons.Script import Environment

+   Environment.Glob = Glob
+

+def exists(env):

+    """

+    Tool always exists.

+    """

+    return True